Phylogenetic and Taxonomic Status Analyses of the Abaso Section from Multiple Nuclear Genes and Plastid Fragments Reveal New Insights into the North America Origin of Populus (Salicaceae).
Identifieur interne : 001728 ( Main/Exploration ); précédent : 001727; suivant : 001729Phylogenetic and Taxonomic Status Analyses of the Abaso Section from Multiple Nuclear Genes and Plastid Fragments Reveal New Insights into the North America Origin of Populus (Salicaceae).
Auteurs : Xia Liu [République populaire de Chine] ; Zhaoshan Wang [République populaire de Chine] ; Wenhao Shao [République populaire de Chine] ; Zhanyang Ye [République populaire de Chine] ; Jianguo Zhang [République populaire de Chine]Source :
- Frontiers in plant science [ 1664-462X ] ; 2016.
Abstract
Although, the Abaso section is widely accepted as an independent section, the taxonomic status of Populus mexicana (section Abaso) has not yet been resolved due to the limited availability markers and/or the lack of P. mexicana specimens in previous studies. Thirty-one poplar species that represent six sections of the Populus genus were sampled, and 23 single-copy nuclear DNA and 34 chloroplast fragments were sequenced. The present study obtained two updated phylogenies of Populus. We found that monophyly of the genus Populus is strongly supported by nuclear and plastid gene, which is consistent with previous studies. P. mexicana, diverged first in the nuclear DNA tree, which occupied the basal position, implying that the section Abaso may be the most ancestral lineage in extant populous species. Given that the short branches and low statistical support for the divergence of sections Abaso and Turanga, this observation probably indicated that a rapid radiation evolution following the early split of the genus Populus. In the plastid tree, P. mexicana clustered with modern-day species of section Tacamahaca in the plastid tree. Based on cytoplasmic and single-copy nuclear marker sequences, we hypothesized that chloroplast capture resulted in the inconsistent position of P. mexicana between the phylogenetic trees. Given the first unequivocal records of poplar fossils from the Eocene with similar leaf morphology to the extant P. mexicana and the phylogenetic positions of P. mexicana in our study, we support the hypothesis that the Populus genus originated in North America, which will provide new insights to the development of the origin of Populus species.
DOI: 10.3389/fpls.2016.02022
PubMed: 28101098
PubMed Central: PMC5209371
Affiliations:
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Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing</wicri:regionArea><wicri:noRegion>Nanjing Forestry UniversityNanjing</wicri:noRegion></affiliation></author><author><name sortKey="Shao, Wenhao" sort="Shao, Wenhao" uniqKey="Shao W" first="Wenhao" last="Shao">Wenhao Shao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Research Institute of Subtropical Forestry, Chinese academy of ForestryHangzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Research Institute of Subtropical Forestry, Chinese academy of ForestryHangzhou</wicri:regionArea><wicri:noRegion>Chinese academy of ForestryHangzhou</wicri:noRegion></affiliation></author><author><name sortKey="Ye, Zhanyang" sort="Ye, Zhanyang" uniqKey="Ye Z" first="Zhanyang" last="Ye">Zhanyang Ye</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry Beijing</wicri:regionArea><wicri:noRegion>Chinese Academy of Forestry Beijing</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Jianguo" sort="Zhang, Jianguo" uniqKey="Zhang J" first="Jianguo" last="Zhang">Jianguo Zhang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing</wicri:regionArea><wicri:noRegion>Nanjing Forestry UniversityNanjing</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Although, the Abaso section is widely accepted as an independent section, the taxonomic status of <i>Populus mexicana</i> (section Abaso) has not yet been resolved due to the limited availability markers and/or the lack of <i>P. mexicana</i> specimens in previous studies. Thirty-one poplar species that represent six sections of the <i>Populus</i> genus were sampled, and 23 single-copy nuclear DNA and 34 chloroplast fragments were sequenced. The present study obtained two updated phylogenies of <i>Populus</i>. We found that monophyly of the genus <i>Populus</i> is strongly supported by nuclear and plastid gene, which is consistent with previous studies. <i>P. mexicana</i>, diverged first in the nuclear DNA tree, which occupied the basal position, implying that the section Abaso may be the most ancestral lineage in extant populous species. Given that the short branches and low statistical support for the divergence of sections Abaso and Turanga, this observation probably indicated that a rapid radiation evolution following the early split of the genus <i>Populus</i>. In the plastid tree, <i>P. mexicana</i> clustered with modern-day species of section Tacamahaca in the plastid tree. Based on cytoplasmic and single-copy nuclear marker sequences, we hypothesized that chloroplast capture resulted in the inconsistent position of <i>P. mexicana</i> between the phylogenetic trees. Given the first unequivocal records of poplar fossils from the Eocene with similar leaf morphology to the extant <i>P. mexicana</i> and the phylogenetic positions of <i>P. mexicana</i> in our study, we support the hypothesis that the <i>Populus</i> genus originated in North America, which will provide new insights to the development of the origin of <i>Populus</i> species.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28101098</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>7</Volume><PubDate><Year>2016</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic and Taxonomic Status Analyses of the Abaso Section from Multiple Nuclear Genes and Plastid Fragments Reveal New Insights into the North America Origin of <i>Populus</i> (Salicaceae).</ArticleTitle><Pagination><MedlinePgn>2022</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2016.02022</ELocationID><Abstract><AbstractText>Although, the Abaso section is widely accepted as an independent section, the taxonomic status of <i>Populus mexicana</i> (section Abaso) has not yet been resolved due to the limited availability markers and/or the lack of <i>P. mexicana</i> specimens in previous studies. Thirty-one poplar species that represent six sections of the <i>Populus</i> genus were sampled, and 23 single-copy nuclear DNA and 34 chloroplast fragments were sequenced. The present study obtained two updated phylogenies of <i>Populus</i>. We found that monophyly of the genus <i>Populus</i> is strongly supported by nuclear and plastid gene, which is consistent with previous studies. <i>P. mexicana</i>, diverged first in the nuclear DNA tree, which occupied the basal position, implying that the section Abaso may be the most ancestral lineage in extant populous species. Given that the short branches and low statistical support for the divergence of sections Abaso and Turanga, this observation probably indicated that a rapid radiation evolution following the early split of the genus <i>Populus</i>. In the plastid tree, <i>P. mexicana</i> clustered with modern-day species of section Tacamahaca in the plastid tree. Based on cytoplasmic and single-copy nuclear marker sequences, we hypothesized that chloroplast capture resulted in the inconsistent position of <i>P. mexicana</i> between the phylogenetic trees. Given the first unequivocal records of poplar fossils from the Eocene with similar leaf morphology to the extant <i>P. mexicana</i> and the phylogenetic positions of <i>P. mexicana</i> in our study, we support the hypothesis that the <i>Populus</i> genus originated in North America, which will provide new insights to the development of the origin of <i>Populus</i> species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Xia</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Zhaoshan</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shao</LastName><ForeName>Wenhao</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Research Institute of Subtropical Forestry, Chinese academy of ForestryHangzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Zhanyang</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jianguo</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>01</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus mexicana</Keyword><Keyword MajorTopicYN="N">chloroplast DNA</Keyword><Keyword MajorTopicYN="N">phylogenetic</Keyword><Keyword MajorTopicYN="N">plant evolution</Keyword><Keyword MajorTopicYN="N">single-copy nuclear</Keyword><Keyword MajorTopicYN="N">taxonomic status</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>09</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>12</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>1</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>1</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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sortKey="Shao, Wenhao" sort="Shao, Wenhao" uniqKey="Shao W" first="Wenhao" last="Shao">Wenhao Shao</name><name sortKey="Wang, Zhaoshan" sort="Wang, Zhaoshan" uniqKey="Wang Z" first="Zhaoshan" last="Wang">Zhaoshan Wang</name><name sortKey="Ye, Zhanyang" sort="Ye, Zhanyang" uniqKey="Ye Z" first="Zhanyang" last="Ye">Zhanyang Ye</name><name sortKey="Zhang, Jianguo" sort="Zhang, Jianguo" uniqKey="Zhang J" first="Jianguo" last="Zhang">Jianguo Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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